FastQCFastQC Report
dom 14 out 2018
bcp30_r1_paired.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamebcp30_r1_paired.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences922122
Sequences flagged as poor quality0
Sequence length1-251
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTAGGGG1950.0031308942190.35416245
GTATACC750.006351952150.38826240-244
TACACTA350.002124071870.822265
GTTAACC800.001078409641.2568473
CCTGGAG4750.002938827539.072693245
TACCGAG4952.657081E-437.494245
CTACACT1201.8909205E-434.4068874
GGGGGGG1154.6422385E-429.52293220-224
TTAACAC1150.006366556528.7222734
TTCTATA2354.317335E-728.0775622
AGAGAGT1650.001212041525.0504426
TAGACAG1750.001712362223.607425
TATACAG1800.0020332622.9204713
TCTATAC2252.8688333E-422.0036533
TGGACTG5602.0008883E-1120.6564925
GTTACAC2250.007403698718.3363763
GGTTTAC2250.00743858318.321441
CCTTTAT2750.001114839217.9883211
TTCCATG10600.00200211217.50899245
TATGGAC2850.00140877217.3713043
Produced by FastQC (version 0.11.5)